Conda

Dependency issue: In Conda, with SCENIC

I’ve been working with pySCENIC in the recent couples of months. It’s a tool that is meant to uncover gene sets that are controlled by transcription factors and suggests the underlying logic of how genes are regulated. It takes gene expression data from single-cell RNA sequencing and seems to be fairly easy to use. So, what took me several months? I did my preliminary run with their R implementaion, which was released earlier in the original reference.