Using Limma to find differentially expressed genes

Ritchie, ME, Phipson, B, Wu, D, Hu, Y, Law, CW, Shi, W, and Smyth, GK (2015). limma powers differential expression analyses for RNA-sequencing and microarray studies.Nucleic Acids Research 43(7), e47.

Following up library dependency in R package compilation

Hello there. I had not anticipated to encounter this problem again so soon, but I did when I was installing yet another package on my own laptop. ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.

Run Seurat (an R Package) in a notebook interface on a server without root

After a while of playing around, I’ll say the best way to use R with a Notebook-style interface on a server where you are no superuser would be using Anaconda, and then run R inside Anaconda to get whatever package you need.